scsilhouette
Topics
Using scsilhouette from the Command Line
Compute Silhouette Scores
Visualize Summary Statistics
Visualize Correlation
Visualize Dotplot
Visualize Distribution
scsilhouette
scsilhouette.viz module
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scsilhouette.viz module
scsilhouette.viz.
plot_correlation_summary
(
cluster_summary_path
:
str
,
x_metric
:
str
,
y_metrics
:
List
[
str
]
,
label
:
str
,
fscore_path
:
str
|
None
=
None
,
mapping_path
:
str
|
None
=
None
)
[source]
scsilhouette.viz.
plot_distribution
(
cluster_summary_path
:
str
,
label_key
:
str
)
[source]
scsilhouette.viz.
plot_dotplot
(
h5ad_path
:
str
,
label_key
:
str
,
embedding_key
:
str
)
[source]
scsilhouette.viz.
plot_silhouette_summary
(
silhouette_score_path
:
str
,
silhouette_score_col
:
str
,
label_key
:
str
,
fscore_path
:
str
|
None
=
None
,
mapping_path
:
str
|
None
=
None
,
sort_by
:
str
=
'median'
)
[source]