scsilhouette.compute module

scsilhouette.compute.run_silhouette(h5ad_path: Path, label_key: str, embedding_key: str | None = None, organism: str | None = None, disease: str | None = None, tissue: str | None = None, cell_count: int | None = None, use_binary_genes: bool = False, gene_list_path: Path | None = None, mapping_output_path: Path | None = None, metric: str = 'euclidean', pca_components: int | None = None, save_scores: bool = False, save_cluster_summary: bool = False, save_annotation: bool = False, show_annotation: bool = False)