Nextflow Workflow Modules

The sc-nsforest-qc-nf Nextflow workflow is composed of three module groups. These pages are auto-generated from the /** ... */ docblocks in each .nf file by docs/parse_nf_docs.py.

Re-generate after any .nf change:

python3 docs/parse_nf_docs.py

• Nsforest Modules
  • Cluster Cid Mapping Process
  • Cluster Stats Process
  • Dendrogram Process
  • Download H5Ad Process
  • Filter Adata Process
  • Merge Nsforest Results Process
  • Plot Histograms Process
  • Plots Process
  • Prep Binary Scores Process
  • Prep Medians Process
  • Run Nsforest Process
• Publish Modules
  • Generate S3 Manifest Process
  • Publish Results Process
• Scsilhouette Modules
  • Compute Silhouette Process
  • Compute Summary Stats Process
  • Viz 2D Projection Process
  • Viz Distribution Process
  • Viz Summary Process